PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001341G0150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 420aa    MW: 46428.1 Da    PI: 4.7017
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001341G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1272129155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d   n+    ++ k+ + g ++t+e Aa+a++ a++k++g
  PH01001341G0150  72 SIYRGVTRHRWTGRFEAHLWDK--NCfsssHNkKKGRQGAYDTEEAAARAYDLAALKYWG 129
                      57****************9993..34445633577777********************98 PP

2AP255.91e-17172224156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAaka++ a+ +++g+
  PH01001341G0150 172 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 224
                      89****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-1672138IPR016177DNA-binding domain
PfamPF008471.9E-1072129IPR001471AP2/ERF domain
SMARTSM003803.2E-2473143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-1473137IPR001471AP2/ERF domain
PROSITE profilePS5103219.45473137IPR001471AP2/ERF domain
PRINTSPR003673.3E-67485IPR001471AP2/ERF domain
CDDcd000182.64E-26172233No hitNo description
PfamPF008474.0E-13172223IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-18172233IPR016177DNA-binding domain
SMARTSM003805.3E-27173237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-19173231IPR001471AP2/ERF domain
PROSITE profilePS5103218.993173231IPR001471AP2/ERF domain
PRINTSPR003673.3E-6213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MTRSSPQPSP SPPPLCSPSS PSFSSSNSTS ISIPCKRART QKSTKAKAKR PKKGTSQSKE  60
PESSNGSGKR SSIYRGVTRH RWTGRFEAHL WDKNCFSSSH NKKKGRQGAY DTEEAAARAY  120
DLAALKYWGP ETILNFPLDD YSKERSEMEG VSREEYLASL RRRSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVLGNKYLY LGTFDTQEEA AKAYDLAAIE YRGANAVTNF DISCYLDQPQ  240
LLAQLQQEPQ VVPALQEEPQ NNQSDNVVQE LNSSETKTPD DFNEPVAVDD SIEDISEPLA  300
VDNSIKDINK PLAVDDSIEE SLWSSCMDYE LDSVTGANIN NSMNLSEWFN DAAFELEGNI  360
GCLFEGCSAV DDGSNDGAGL EEFSLFEEGD KLMDFSDREE GITQATNVSC PPKMITVCN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978469.11e-180PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6X5Y62e-93WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK3ZIN10.0K3ZIN1_SETIT; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-71AP2 family protein